Figure 3
From: Highly improved homopolymer aware nucleotide-protein alignments with 454 data
Parameter evaluation for a 454-aware model, without flowpeak information. The figure describes the single homopolymer gap penalty (Sh = S · h) in Panel A, the single gap penalty (S) in Panel B, and the flowpeak deviation (k) in Panel C. The parameter values are evaluated by Matthews Correlation Coefficient (y-axis) of the homopolymer insertion/deletion recovery and each parameter value are given on the x-axis. Each figure plots the values obtained for all seven targets ranging from 100% down to 40% identity. In addition, the mean accuracy is also shown by squares and dashed lines.