From: Highly improved homopolymer aware nucleotide-protein alignments with 454 data
Parameters/ID | 40% | 50% | 60% | 70% | 80% | 90% | 100% |
---|---|---|---|---|---|---|---|
S = 30, D = 54, h = 0.2, k = 0.9, V = 1 | 0.415 | 0.415 | 0.462 | 0.493 | 0.538 | 0.571 | 0.605 |
S = 15, D = 26, h = 0.4, k = 0.6, V = 0 | 0.402 | 0.427 | 0.464 | 0.547 | 0.606 | 0.665 | 0.706 |
S = 15, D = 29, h = 0.4, k = 0.6, V = 0 | 0.403 | 0.425 | 0.467 | 0.548 | 0.607 | 0.666 | 0.708 |
S = 12, D = 24, h = 0.5, k = 0.6, V = 0 | 0.351 | 0.359 | 0.461 | 0.571 | 0.640 | 0.691 | 0.765 |
S = 8, D = 15, h = 0.7, k = 1, V = 0 | 0.259 | 0.261 | 0.363 | 0.553 | 0.625 | 0.694 | 0.791 |