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Table 5 Proxy-Analysis of rs7903146 (TCF7L2)

From: Quick, “Imputation-free” meta-analysis with proxy-SNPs

Studya

SNP/proxy-SNP

Chr

Position

EAb

OAc

β d

see

Pf

LDg

1

rs7903146

10

114758349

A

G

0.39

0.09

1.5×10−05

-

2

rs7903146

10

114758349

A

G

0.68

0.20

7.0×10−04

-

3

rs7903146

10

114758349

A

G

0.40

0.13

3.0×10−03

-

4

rs7903146

10

114758349

A

G

0.44

0.08

1.6×10−07

-

5

rs4506565

10

114756041

T

A

0.20

0.05

2.0×10−04

0.945

6

rs4506565

10

114756041

T

A

0.30

0.06

3.8×10−04

0.945

Meta-Analysis

rs7903146

10

114758349

A

G

0.31

0.03

1.5×10−22

-

  1. aEnumeration according to Table 1.
  2. bEffect allele: the allele beta is given for.
  3. cOther allele.
  4. dEffect estimate according to logistic regression.
  5. eStandard error.
  6. fp-value.
  7. gbetween SNP and proxy-SNP according to reference data (1,000 Genomes).
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BMC Bioinformatics

ISSN: 1471-2105

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