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Table 1 Circadian effect for 9 genes put forward in the Hazen study

From: Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)

Gene ID Name Overlap Max. Eff. Top 20
AT1G22770 GIGANTEA 0.529 2.28 yes
AT1G68050 FLAVIN-BINDING KELCH DFB PROTEIN1 0.867 2.90 yes
AT2G25930 EARLY FLOWERING3 0.562 1.46 yes
AT2G46790 PSEUDO RESPONSE REGULATOR9 0.473 1.38 yes
AT2G46830 CIRCADIAN CLOCK ASSOCIATED1 0.867 3.89 yes
AT3G22380 TIME FOR COFFEE 0.040 0.06 no
AT3G46640 LUX ARRHYTHMO 0.717 1.69 yes
AT5G57360 ZEITLUPE 0.350 0.41 no
AT5G61380 TIMING OF CAB2 EXPRESSION1 0.797 1.74 yes
  1. Analysis results for 8 circadian clock associated genes and for TIME FOR COFFEE, a clock gene that does not cycle at the transcriptional level. These are the genes on the forward strand that were also tested in [13]. Overlap indicates the proportion of overlap between the regions detected by the wavelet-based method and the gene annotation; Max. Eff. gives the maximum estimated effect or amplitude size for this gene; Top 20 indicates whether the gene is within the top 20 genes with the strongest circadian effect for the associated chromosome, as produced by the wavelet-based method.