Graph rigidity reveals well-constrained regions of chromosome conformation embeddings

BMC Bioinformatics

Table 2 Chromosome conformation data sets

Experiment	Genome	Resolution	Data provided
Lieberman-Aiden et al.	Human	100,1000	R,C,SN
Duan et al.	Budding yeast	F,10	R,C,SN,EN
Tanizawa et al.	Fission yeast	20	R,SN,EN
Bau et al.	Human chr. 16	F	C

Reported information for various chromosome conformation data sets. Some data is analyzed at the restriction fragment length resolution (F) or at coarser resolutions (in kbp). Some experiments result in paired-end reads (R) that are deposited in an online database. Interaction frequency or counts (C), a statistical normalization of counts (SN), and experimental normalization of counts (EN) are also sometimes reported.

ISSN: 1471-2105