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Table 3 TEs families involved in pre-miRNAs

From: ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins

  

MITE

Other

DNA

LTR /

CR1 /

L1

SINE

Other

Others

  

mariner

MITEs

transposons

ERV

RTE

  

Non-LTR

 

Frog

TE-derived

     

1

   
 

mis-annotated

         

Human

TE-derived

11

11

8

20

22

18

40

3

5

 

mis-annotated

65

32

 

33

19

41

58

 

5

Mouse

TE-derived

1

13

24

5

19

1

32

3

1

 

mis-annotated

 

5

2

17

7

11

28

 

7

Nematode

TE-derived

 

1

1

1

    

1

 

mis-annotated

 

1

      

1

Rat

TE-derived

1

2

1

 

10

 

7

  
 

mis-annotated

 

3

 

1

15

 

11

  

Sea squirt

TE-derived

1

1

1

 

1

  

2

 
 

mis-annotated

1

1

       
  1. TEs families involved in pre-miRNAs. The table gives the number of times TE families are identified by ncRNAclassifier in frog, human, mouse, nematode, rat and sea squirt pre-miRNAs. If a precursor contains two or more TE fragments, we counted each fragment.