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Table 1 Mining for heart-specific CRMs - input data

From: Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs

n CNEs/Locus CNEs Controls
0 9.6 1480 7400
10 10.8 1667 8335
20 13.1 2019 10095
30 15.3 2358 11790
40 17.5 2692 13460
60 20.9 3219 16095
80 23.7 3644 18220
100 25.7 3959 19795
All 31.9 4911 24555
  1. The mixed sets consisted of CNEs found in the vicinity of 154 heart-specific genes. Nine sets were constructed. All mixed sets contained CNEs within 10 kbp upstream and 10 kbp downstream of the transcription start sites (TSSs). We expanded the mixed sets by including n CNEs that are closest to the TSSs, if they were not already included, n = 0, 10, 20, 30, 40, 60, 80, 100, ∞. A control set included five times as many sequences as its mixed set counterpart. We controlled for sequence length while assembling the control sets.