Table 5 CrmMiner performance on 57 human tissues and cell types

subthalamic nucleus

6.72

2.1e ⁻¹⁰

78

E2F1-TFIII E2F1DP2-ZBED6 GAF-NFMUE1

prefrontal cortex

6.60

5.7e ⁻¹⁵

58

SP1-PITX3 PAX4-BEN EFC-E2A

cingulate cortex

6.44

4.3e ⁻¹³

37

MAZR-NFAT2 PAX9-IK3 HEB-AHRARNT

heart

5.52

4.4e ⁻²⁰

89

PAX9-PXRRXR RSRFC4-E47 CETS1P54-NRSE

caudate nucleus

5.27

5.6e ⁻¹⁴

20

SP1SP3-SP1 SP1-ETF MZF1-TAXCREB

prostate

5.03

4.2e ⁻⁸

79

E2F-UF1H3BETA NFY-AP2GAMMA MSX3-SP3

amygdala

4.61

7.3e ⁻¹⁰

34

ZFP281-RFX AHR-CKROX ETF-SP4

BM-CD71⁺ early erythroid

4.56

1.5e ⁻⁸

90

PAX4-NRF1 NFY-KROX MOVOB-NFAT2

adrenal gland

4.40

5.7e ⁻⁷

71

STAT6-ZF5 SP1-GATA3 NKX11-SP4

fetal brain

4.26

5.2e ⁻¹⁵

90

VDR-E2F1 OBOX2-PPARA BEN-ETF

bone marrow

4.16

1.8e ⁻⁷

68

CDXA-SP1 NFKB-E2F1 AR-PR

BM CD34⁺

4.15

6.0e ⁻⁹

130

NRSE-E2F1 E2F1-SP1 E2F-SP1

fetal thyroid

4.13

5.3e ⁻⁸

108

E2F-SP4 NFY-ZF5 STAT3-MEF2

bronchial epithelial cells

4.09

7.4e ⁻⁷

85

HOXD3-CEBP KLF15-CEBP NKX25-HEN1

occipital lobe

4.09

6.4e ⁻⁴

38

EGR2-DEAF1 AHR-CACCCBINDINGFACTOR E2F1-SREBP

whole brain

4.05

3.5e ⁻¹²

21

MAZ-ETF SP1SP3-GKLF MZF1-CTCF

PB-BDCA4⁺ dentritic cells

4.04

2.3e ⁻⁹

98

ATF1-ETF AP1-PEBP AP2-PPARA 1

placenta

3.82

1.6e ⁻¹¹

96

COMP1-GKLF GKLF-NFY CTCF-AP1

hypothalamus

3.82

5.3e ⁻⁵

80

GADP-ERR1 AP1-FOXO1 OCT-PAX5

liver

3.73

5.7e ⁻⁹

97

COUP-SZF11 COUPTF-SRF GATA4-GFI1

thyroid

3.65

8.6e ⁻⁸

93

MTATA-OLF1 MUSCLE-CHX10 LBX2-SP4

thymus

3.65

5.0e ⁻⁷

93

IK1-KLF15 MINI19-ALPHACP1 IK1-GKLF

spinal cord

3.64

1.5e ⁻⁶

68

IRF-LRF REX1-GLI3 ALPHACP1-PPARA

uterus

3.58

2.9e ⁻⁸

85

ELK1-UF1H3BETA TAL1-E2F1 AP2ALPHA-PITX1

pons

3.57

6.1e ⁻⁵

108

IPF1-CART1 NMYC-CNOT3 PAX4-MYOGNF1

trachea

3.48

1.1e ⁻⁹

110

TRF1-TFIII DEC-CP2 COUPTF-STAT4

lung

3.47

3.0e ⁻⁷

36

AP2-TR4 MAZ-CBF SP1SP3-AP1

tonsil

3.42

0.0019

60

HEN1-NFKAPPAB65 PAX4-SMAD E2F6-NRSF

PB-CD19⁺ Bcells

3.40

9.5e ⁻⁸

61

ESE1-PAX6 PAX4-TBX5 MZF1-NRF2

721 B lymphoblasts

3.35

1.8e ⁻⁶

104

SP1SP3-E2F4DP1 STAT4-NRF2 ZIC1-EGR1

testis

3.30

4.8e ⁻⁴

73

AP2-ATF T3R-HNF4 MYOD-SRF

uterus corpus

3.27

1.3e ⁻⁸

91

TCF4-POU6F1 CAAT-PITX3 PAX4-XVENT1

tongue

3.24

3.8e ⁻⁷

72

ZFP281-NFY SP3-PITX3 AP2-IK2

temporal lobe

3.21

3.7e ⁻⁷

95

TBX5-MTF1 MTATA-HIC1 ERG-ZIC3

PB-CD56⁺ NKCells

3.12

3.1e ⁻⁵

53

NFY-SP1 CMYB-STAT6 SRF-SP4

smooth muscle

3.11

2.9e ⁻⁶

87

KROX-MEF2 SP1-XBP1 HIF1-IK

pituitary gland

3.06

2.2e ⁻⁶

96

MTATA-MAZR ZF5-WT1 AHR-ETF

adrenal cortex

3.04

1.5e ⁻⁵

111

MYCMAX-PAX4 SP2-E2F1 VJUN-ZNF219

BM-CD105⁺ endothelial

2.95

0.0049

79

E2F-SMAD4 AP4-PAX4 P53-NFY

lymph node

2.94

2.6e ⁻⁵

131

CETS1P54-GABP HIF1-NRSE PEA3-MTF1

adipocyte

2.91

1.3e ⁻⁶

79

AP2-NFY E2F1-LXR CNOT3-IK2

skeletal muscle

2.89

7.6e ⁻⁷

80

P53-CACD MEIS2-STAT1 MYOD-XVENT1

thalamus

2.86

0.0065

42

PLAG1-PAX3 AP1-CMAF MZF1-GATA2

pancreatic islets

2.79

6.7e ⁻⁸

97

CDXA-PROP1 MEIS1-ZBED6 NFKB-E2F

skin

2.79

7.8e ⁻⁵

73

CACBINDINGPROTEIN-XVENT1 NFKB-ZTA ER-SREBP1

medulla oblongata

2.78

7.9e ⁻⁷

103

ZNF515-NKX25 CETS1P54-NKX26 P53-CMYB

whole blood

2.77

5.8e ⁻⁵

53

PU1-SP2 GFI1-CTCF AP2-GR

cardiac myocytes

2.69

9.1e ⁻⁴

120

EGR-MECP2 SRY-CNOT3 E2F-EGR3

fetal lung

2.62

1.7e ⁻⁴

55

HIF1-LMAF CTCF-MECP2 AML2-CP2

PB-CD4⁺ Tcells

2.58

0.0026

121

NGFIC-EGR3 ZFP206-CBF AHRARNT- COUP

cerebellum peduncles

2.52

1.2e ⁻⁴

74

ZNF219-NFY KLF15-OBOX2 NKX11-ZNF219

olfactory bulb

2.31

4.3e ⁻⁴

70

NFY-SP1 NFKAPPAB-CTCF CP2-GLI

cerebellum

2.30

0.0034

58

AP2-LBX2 COUPTF-E2F E2F-SREBP

kidney

2.29

4.08e ⁻⁵

87

GCM-ARP1 E2A-RORBETA NFY-TFIII

BM-CD33⁺ myeloid

1.80

0.0489

92

SRF-HMGIY PR-STAT6 T3R-AP1

parietal lobe

1.78

0.0443

82

AP2ALPHA-E2F1 HIF1-GABP BEN-MYF

appendix

1.75

0.0285

88

AP1-LXR PAX2-PAX4 CNOT3-CREB