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Table 1 Comparison of Quality Assurance Functions Available in FlowJo, flowQ, and QUAliFiER

From: QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data

 

Software package

Feature

FlowJo1†

flowQ

QUAliFiER@

QA Across Multiple Experiments

  

@

QA Ungated Data

 

@

QA Gated Data

  

@

Interactive HTML QA Report

 

@

Use Study Metadata as Grouping Variables for QA

  

@

Customizable QA tasks

  

@

Customizable outlier detection

  

@

Automated for pipelined analysis

 

@

  1. Although FlowJo does not have internal QA tools, it can export arbitrary population statistics in csv format that may be analyzed in other software.