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Table 1 DMET data format

From: DMET-Analyzer: automatic analysis of Affymetrix DMET Data

Probes

Subjec t 1

Subjec t 2

Subjec t 3

Subjec t 4

Prob e 1

C/C

C/C

T/T

T/T

Prob e 2

G/C

C/C

-/T

A/A

Prob e 3

C/T

C/T

C/T

C/T

Prob e n

G/G

A/G

G/G

G/G

  1. In this table is represented a possible Example of input table, produced at the end of DMET-Console workflow. Where each row represents a probe identified by its own identifier, and each column represents a subject represented by its own identifier. File must contain in the first row a list of specific identifiers: the probe_set identifiers in the first column and the identifiers of subjects, in the subsequent ones. The cell ( i,j) contains the allele belonging at i-th subject into the j-th probe_set, identified in the previous analysis.
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BMC Bioinformatics

ISSN: 1471-2105

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