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Table 2 SABMark Twilight Zone multiple alignments (all values are averages)

From: Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

 

Core length

RMSD

Seq

Str

Cons

Partial length

Partial Seq

Mustang

63.4

4.12

3.92

3.05

3.49

97.6

4.46

Matt

66.9

2.64

4.15

2.29

3.35

84.0

4.58

SAlign

59.6

3.51

3.88

2.83

3.36

90.7

4.34

(Promals3D)

75.4

-

3.89

-

-

111.8

4.39

Formatt (mafft)

45.01

1.97

3.85

1.77

2.81

54.0

4.32

Formatt (clustalw)

64.05

2.75

3.98

2.32

3.15

76.2

4.49

Formatt (muscle)

64.37

2.77

3.99

2.33

3.16

76.0

4.55

Formatt (probcons)

64.5

2.97

4.00

2.44

3.22

75.6

4.54