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Table 1 Yeast interactome maps used in this study for method evaluation

From: Cluster-based assessment of protein-protein interaction confidence

network property

Tarassov-all

Tarassov-hq

Yu-Ito-Uetz

Collins

CPDB-yeast

Costanzo

references

[12]

[12]

[9]

[49]

[51]

[52]

method

PCA

PCA

Y2H

AP-MS

multiple

genetic

node count

2238 (2293)

889 (1124)

1647 (2018)

1002 (1620)

6073 (6075)

4278 (4278)

link count

9360 (9646)

2407 (2770)

2518 (2930)

8313 (9064)

74332 (74333)

63927 (63927)

clustering

0.14

0.24

0.08

0.72

0.19

0.06

coefficient

      

links in

5861 (62%)

1761 (73%)

440 (17%)

8129 (97%)

63385 (85%)

47822 (74%)

triangles

      

mean shortest

3.7

5.6

5.6

5.5

2.7

2.9

path length

      

links with ≥ 3

546 (5%)

419 (17%)

598 (23%)

1635 (19%)

6324 (8%)

2546 (3%)

publications

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