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Table 1 Yeast interactome maps used in this study for method evaluation

From: Cluster-based assessment of protein-protein interaction confidence

network property Tarassov-all Tarassov-hq Yu-Ito-Uetz Collins CPDB-yeast Costanzo
references [12] [12] [9] [49] [51] [52]
method PCA PCA Y2H AP-MS multiple genetic
node count 2238 (2293) 889 (1124) 1647 (2018) 1002 (1620) 6073 (6075) 4278 (4278)
link count 9360 (9646) 2407 (2770) 2518 (2930) 8313 (9064) 74332 (74333) 63927 (63927)
clustering 0.14 0.24 0.08 0.72 0.19 0.06
coefficient       
links in 5861 (62%) 1761 (73%) 440 (17%) 8129 (97%) 63385 (85%) 47822 (74%)
triangles       
mean shortest 3.7 5.6 5.6 5.5 2.7 2.9
path length       
links with ≥ 3 546 (5%) 419 (17%) 598 (23%) 1635 (19%) 6324 (8%) 2546 (3%)
publications