From: Cluster-based assessment of protein-protein interaction confidence
network property | Tarassov-all | Tarassov-hq | Yu-Ito-Uetz | Collins | CPDB-yeast | Costanzo |
references | [12] | [12] | [9] | [49] | [51] | [52] |
method | PCA | PCA | Y2H | AP-MS | multiple | genetic |
node count | 2238 (2293) | 889 (1124) | 1647 (2018) | 1002 (1620) | 6073 (6075) | 4278 (4278) |
link count | 9360 (9646) | 2407 (2770) | 2518 (2930) | 8313 (9064) | 74332 (74333) | 63927 (63927) |
clustering | 0.14 | 0.24 | 0.08 | 0.72 | 0.19 | 0.06 |
coefficient | Â | Â | Â | Â | Â | Â |
links in | 5861 (62%) | 1761 (73%) | 440 (17%) | 8129 (97%) | 63385 (85%) | 47822 (74%) |
triangles | Â | Â | Â | Â | Â | Â |
mean shortest | 3.7 | 5.6 | 5.6 | 5.5 | 2.7 | 2.9 |
path length | Â | Â | Â | Â | Â | Â |
links with ≥ 3 | 546 (5%) | 419 (17%) | 598 (23%) | 1635 (19%) | 6324 (8%) | 2546 (3%) |
publications | Â | Â | Â | Â | Â | Â |