dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes

BMC Bioinformatics

Table 2 The top 30 predictions of imprinted genes based on mRNA-Seq data from Group I and Group II samples

SNP(rs#)	Chr	Location	Str	Posterior	GeneID	Symbol	SS	FDR	Group
11538691	chr17	4789783	+	1	5216	PFN1	9	0	I
178412	chr7	73173272	-	1	3984	LIMK1	8	0	I
17094371	chr14	57677831	+	1	145407	C14orf37	9	0	I
2596331	chr1	143820905	-	0.999996	9554	SEC22B	7	0.26	I
8110904	chr19	47723208	+	0.999995	634	CEACAM1	4	0	I
11555395	chr17	67629054	+	0.999993	6662	SOX9	5	0	I
4015375	chr7	89628110	+	0.99997	26872	STEAP1	6	0	I
4015375	chr7	89628110	+	0.99997	256227	MGC87042	6	0	I
10208923	chr2	141157767	+	0.9998	53353	LRP1B	5	0	I
9807047	chr17	46229893	+	0.999751	731414	LOC731414	7	0	I
584959	chr3	61703763	+	0.995669	100128936	RPL10AP6	9	0.052	I
10800864	chr1	201003241	+	0.995398	10765	KDM5B	9	0.052	I
10306	chr10	74437407	-	0.993645	5033	P4HA1	4	0	I
2009646	chr5	108148856	+	0.989758	2241	FER	6	0	I
2009646	chr5	108148856	+	0.989758	643534	LOC643534	6	0	I
178412	chr7	73173272	-	1	3984	LIMK1	11	0.098	II
11538691	chr17	4789783	+	1	5216	PFN1	20	0.023	II
11541557	chr1	226352225	+	1	375	ARF1	9	0	II
17492855	chr2	158989711	+	0.999999	130940	CCDC148	18	0.014	II
2352731	chr3	144378737	+	0.999995	5089	PBX2	10	0.072	II
1065453	chr7	99755171	-	0.999992	441272	SPDYE3	5	0	II
11066116	chr12	110915447	+	0.999989	89894	TMEM116	8	0	II
2499	chr6	30021520	-	0.999982	3105	HLA-A	7	0.26	II
3093976	chr6	31610839	-	0.99993	7919	BAT1	8	0.12	II
705	chr15	22770604	+	0.999919	6638	SNRPN	20	0.023	II
705	chr15	22770604	+	0.999919	8926	SNURF	20	0.023	II
3132453	chr6	31712022	-	0.999913	7916	BAT2	4	0	II
1051470	chr12	117067614	+	0.999874	5037	PEBP1	14	0.051	II
1364261	chr16	70597171	-	0.999859	100130263	LOC100130263	8	0	II
11160608	chr14	100382845	+	0.999796	100130955	LOC100130955	20	0.023	II

Abbreviations: rs#-SNP identification number, Chr-chromosome, Str-strand, SS-sample size.

ISSN: 1471-2105