dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes

BMC Bioinformatics

Table 3 Tissues where validated imprinted genes most likely had biallelic expression

SNP(rs#)	Chr	Location	Str	Posterior	Gene ID	Gene Symbol	Tissue	Group
3807551	chr7	50627897	-	6.84E-17	2887	GRB10	Skeletal Muscle	I
2585	chr11	2107019	+	9.09E-210	3481	IGF2	Liver	I
10770125	chr11	2125589	+	7.15E-43	3481	IGF2	Liver	I
8813	chr11	3065081	-	1.20E-11	114879	OSBPL5	Colon	I
17178177	chr11	3065446	+	6.83E-10	114879	OSBPL5	Colon	I
10770125	chr11	2125589	+	7.15E-43	51214	IGF2AS	Liver	I
7121	chr20	56912201	+	0	2778	GNAS	Lymph node	I
854547	chr7	94761791	+	1.61E-10	55607	PPP1R9A	Cerebellum	II
8164	chr11	6372457	+	1.54E-30	6609	SMPD1	Cerebellum	II
7951904	chr11	6369506	+	2.68E-10	6609	SMPD1	Cerebellum	II
11601088	chr11	6371967	+	1.62E-09	6609	SMPD1	Cerebellum	II
2272666	chr8	1.46E+08	+	2.63E-17	79581	GPR172A	Cerebellum	II
2280840	chr8	1.46E+08	+	1.05E-57	79581	GPR172A	Cerebellum	II
2615374	chr8	1.41E+08	+	1.51E-13	51305	KCNK9	Cerebellum	II

Posteriors were calculated based on Group I or II (see Table 5). The “Tissue” column indicates where genes were most likely biallelically expressed. Genes with contradictory evidence (i.e., genes had posteriors <10^-8 and posteriors ≥0.2) were discarded. IGF2, OSBPL5, SMPD1 and GPR172A had at least 2 SNPs with posteriors less than 10^-8. Abbreviations are the same as in Table 2.

ISSN: 1471-2105