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Figure 14 | BMC Bioinformatics

Figure 14

From: ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs

Figure 14

BreakDancer results for DBA/2J reads improved by ChopSticks. Box-and-whisker plots of upstream and downstream differences of deletion calls obtained by BreakDancer and those improved by ChopSticks. The results in this figure indicate that ChopSticks can improve the resolution of deletion calls for real sequences. Although ChopSticks trimmed upstream ends of a few deletion calls too much when k=1 or k=2 and f was small, such problems quickly disappeared for greater k and f values.

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