Skip to main content

Table 2 Number of bases and number of reads of simulated data set

From: ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs

 

Depth of coverage

 

2

5

10

15

20

Total number of bases

394,391,200

985,978,000

1,971,956,000

2,957,934,000

3,943,912,000

Number of reads

3,943,912

9,859,780

19,719,560

29,579,340

39,439,120

Number of mapped reads

3,677,398

9,194,942

18,391,288

27,587,970

36,783,348

  1. Summarized statistics of simulated NGS reads and their alignments to mm9. On the third row, we only counted read pairs whose reads were both mapped uniquely.