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Table 1 Inverted sequences found in chromosome 16 of the CEU population using haplotype (phased) and genotype data

From: Identification of polymorphic inversions from genotypes

Data type

window

LBPmin

LBPmax

RBPmin

RBPmax

MaxBic

invFreq

Ns

Haplotypes

0.4

28.23496

28.40377

28.67367

28.80467

117.29

0.60

118

 

0.4

33.70440

34.67086

34.11169

35.07705

153.01

0.39

494

 

0.4

45.68583

46.08754

46.08754

46.49553

236.34

0.77

1302

 

0.4

66.24902

66.44043

66.65147

66.84146

189.82

0.40

350

 

0.4

68.51016

68.66370

68.91604

69.06441

159.35

0.42

641

 

0.4

70.99660

71.05418

71.39778

71.45419

99.61

0.40

17

 

0.7

33.49144

34.31572

34.19297

35.03194

207.00

0.49

923

 

0.7

45.69871

45.81018

46.40781

46.51082

186.17

0.74

259

Genptypes

0.4

34.07920

34.55067

34.48884

35.00029

137.04

0.19

6

 

0.4

68.51016

68.66370

68.93968

69.06441

147.57

0.46

38

  1. The segments where identified scanning the whole chromosome with window sizes 0.4 Mb and 0.7 Mb. Overlapping trial segments with BIC > 50 where selected for the final classification of chromosomes and to set the limits of the inverted sequences. Keys: LBPmin: minimum left breakpoint coordinate, LBPmax: maximum left breakpoint, RBPmin: minimum right breakpoint, RBPmax: maximum right breakpoint, MaxBic: maximum BIC, invFreq: frequency of the inversion within the population, Ns: Number of overlapping segments in the inversion.