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Table 1 Inverted sequences found in chromosome 16 of the CEU population using haplotype (phased) and genotype data

From: Identification of polymorphic inversions from genotypes

Data type window LBPmin LBPmax RBPmin RBPmax MaxBic invFreq Ns
Haplotypes 0.4 28.23496 28.40377 28.67367 28.80467 117.29 0.60 118
  0.4 33.70440 34.67086 34.11169 35.07705 153.01 0.39 494
  0.4 45.68583 46.08754 46.08754 46.49553 236.34 0.77 1302
  0.4 66.24902 66.44043 66.65147 66.84146 189.82 0.40 350
  0.4 68.51016 68.66370 68.91604 69.06441 159.35 0.42 641
  0.4 70.99660 71.05418 71.39778 71.45419 99.61 0.40 17
  0.7 33.49144 34.31572 34.19297 35.03194 207.00 0.49 923
  0.7 45.69871 45.81018 46.40781 46.51082 186.17 0.74 259
Genptypes 0.4 34.07920 34.55067 34.48884 35.00029 137.04 0.19 6
  0.4 68.51016 68.66370 68.93968 69.06441 147.57 0.46 38
  1. The segments where identified scanning the whole chromosome with window sizes 0.4 Mb and 0.7 Mb. Overlapping trial segments with BIC > 50 where selected for the final classification of chromosomes and to set the limits of the inverted sequences. Keys: LBPmin: minimum left breakpoint coordinate, LBPmax: maximum left breakpoint, RBPmin: minimum right breakpoint, RBPmax: maximum right breakpoint, MaxBic: maximum BIC, invFreq: frequency of the inversion within the population, Ns: Number of overlapping segments in the inversion.