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Table 2 Predicted inversions on chromosome 17 for the CEU and YRI populations on genotype data (window size 0.4Mb and t B = 50).

From: Identification of polymorphic inversions from genotypes

Population

LBPmin

LBPmax

RBPmin

RBPmax

MaxBic

invFreq

Ns

CEU

21.96788

22.09834

22.37082

22.50184

99.32

0.25

24

 

24.96601

25.14566

25.36840

25.54785

137.18

0.47

265

 

41.07267

41.64131

41.47280

42.09285

196.52

0.22

444

 

53.84780

54.18923

54.25283

54.59168

322.95

0.28

802

YRI

21.88505

22.11686

22.36658

22.52599

111.94

0.39

9

 

24.99465

25.09088

25.39824

25.49422

79.01

0.57

11

 

53.90580

54.11198

54.30626

54.51477

235.38

0.46

12

  1. One of the CEU predictions corresponds to a known inversion at 17q21, and was also found with window size 0.7Mb (see main text). Consistent with experimental evidence this is a CEU specific inversion, no inversions where predicted in the YRI population in this region with any window size.
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BMC Bioinformatics

ISSN: 1471-2105

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