Skip to main content

Table 2 CPU times for clustering artificial community

From: Denoising PCR-amplified metagenome data

Function

CPU time (seconds)

ESPRIT

 

kmerdist

74.80

needledist

924.68

Total

1002.68

DADA

 

N-W alignments

97.81

read p-values

58.84

Total

296.64

ESPRIT+DADA

1.30×103

AmpliconNoise

7.57×104

  1. The CPU times for a few significant subroutines within DADA and ESPRIT as well as their total CPU times.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us