Table 2 Median model sizes and the corresponding interquartile ranges (IQR) as well as the average true positives for phenotypes Q1 and Q2 for all investigated methods summarized across the 200 repetitions (first three columns)
From: A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies
| Â | Results | Comparisons | ||||
|---|---|---|---|---|---|---|
| Â | Method | Model size | TP | TP | TP | TP |
| Â | Â | Median (IQR) | Method | CAR | COR | RND |
Q1 | Â | Â | Â | Â | Â | Â |
| Â | CAR | 51 (53) | 5.85 | 5.85 | 5.42 | 0.23 |
| Â | COR | 176 (108) | 8.06 | 8.99 | 8.06 | 0.88 |
| Â | NEG | 1390 (118) | 15.31 | 17.57 | 14.38 | 6.60 |
| Â | MCP | 20 (5) | 4.11 | 4.19 | 3.95 | 0.12 |
| Â | BOOST | 53 (5) | 5.84 | 5.91 | 5.50 | 0.25 |
| Â | LASSO | 37 (31) | 5.19 | 5.21 | 4.89 | 0.18 |
Q2 | Â | Â | Â | Â | Â | Â |
| Â | CAR | 31 (38) | 2.93 | 2.93 | 2.85 | 0.29 |
| Â | COR | 1 (7) | 0.38 | 0.21 | 0.38 | 0.00 |
| Â | NEG | 1632 (755) | 20.21 | 28.08 | 25.90 | 14.50 |
| Â | MCP | 29 (5) | 2.75 | 2.82 | 2.76 | 0.28 |
| Â | BOOST | 59 (6) | 3.92 | 4.34 | 3.82 | 0.59 |
| Â | LASSO | 15 (36) | 1.50 | 1.88 | 1.97 | 0.14 |