Table 2 SS algorithm assignment success
From: Identifying structural domains of proteins using clustering
Linkage | metric | m | s | 1-domain | 2-domain | 3-domain | 4-domain |
|---|---|---|---|---|---|---|---|
Average | midpt | 19 | 5 | 71% (0.52) | 60% (0.35) | 47% (0.28) | 34% (0.19) |
Average | midpt | 22 | 5 | 75% (0.55) | 60% (0.38) | 46% (0.31) | 34% (0.21) |
Average | midpt | 25 | 5 | 80% (0.56) | 58% (0.40) | 43% (0.32) | 28% (0.20) |
Average | midpt | 22 | 3 | 68% (0.53) | 51% (0.29) | 41% (0.20) | 35% (0.15) |
Average | midpt | 22 | 5 | 75% (0.55) | 60% (0.38) | 46% (0.31) | 34% (0.21) |
Average | midpt | 22 | 7 | 84% (0.53) | 55% (0.40) | 38% (0.33) | 18% (0.18) |
Average | closest | 22 | 3 | 79% (0.55) | 51% (0.51) | 40% (0.41) | 27% (0.27) |
Average | closest | 22 | 4 | 81% (0.54) | 52% (0.38) | 39% (0.28) | 28% (0.19) |
Complete | midpt | 40 | 5 | 71% (0.51) | 45% (0.25) | 38% (0.20) | 22% (0.10) |
Complete | midpt | 40 | 7 | 73% (0.51) | 48% (0.28) | 38% (0.23) | 23% (0.13) |
Complete | midpt | 40 | 9 | 77% (0.50) | 50% (0.32) | 38% (0.26) | 18% (0.12) |
Complete | midpt | 36 | 7 | 67% (0.49) | 47% (0.24) | 37% (0.19) | 24% (0.11) |
Complete | midpt | 38 | 7 | 70% (0.50) | 47% (0.26) | 38% (0.21) | 23% (0.11) |
Complete | midpt | 42 | 7 | 76% (0.51) | 49% (0.31) | 38% (0.25) | 23% (0.14) |