Table 5 Comparison of the present work with previously published algorithms, Benchmark 2
From: Identifying structural domains of proteins using clustering
Algorithm1 | Time2 | 1-domain | 2-domain | 3-domain | 4-domain | Overall3 |
|---|---|---|---|---|---|---|
SS Algorithm | 5s | 86% (0.75) | 64% (0.47) | 60% (0.46) | 0% (−0.03) | 69% |
CA Algorithm | 26s | 92% (0.82) | 78% (0.69) | 76% (0.69) | 25% (0.32) | 80% |
DDomain | 497s | 94% (0.78) | 75% (0.68) | 48% (0.56) | 25% (0.16) | 75% |
DomainParser2 | 398s | 98% (0.86) | 75% (0.71) | 64% (0.60) | 50% (0.39) | 79% |
PDP | 99s | 92% (0.93) | 84% (0.82) | 68% (0.69) | 75% (0.55) | 83% |
Random (see text) | 1s | 71 ± 3% (<0) | 15 ± 7% (<0) | 1 ± 2% (<0) | 0% (<0) | 31 ± 3% |