Table 7 Performance of mGOASVM with different inputs and different numbers of homologous proteins for (a) the virus dataset and (b) the plant dataset
(a) Performance on the viral protein dataset | ||||
|---|---|---|---|---|
Input data type | #homo | N d (GO) | Locative accuracy | Actual accuracy |
AC | 0 | 331 | 244/252 = 96.8% | 191/207 = 92.3% |
S | 1 | 310 | 244/252 = 96.8% | 184/207 = 88.9% |
S | 2 | 455 | 235/252 = 93.3% | 178/207 = 86.0% |
S | 4 | 664 | 221/252 = 87.7% | 160/207 = 77.3% |
S | 8 | 1134 | 202/252 = 80.2% | 130/207 = 62.8% |
S + AC | 1 | 334 | 242/252 = 96.0% | 188/207 = 90.8% |
S + AC | 2 | 460 | 238/252 = 94.4% | 179/207 = 86.5% |
S + AC | 4 | 664 | 230/252 = 91.3% | 169/207 = 81.6% |
S + AC | 8 | 1134 | 216/252 = 85.7% | 145/207 = 70.1% |
(b) Performance on the plant protein dataset | ||||
Input data | #homo | N d (GO) | Locative accuracy | Actual accuracy |
AC | 0 | 1532 | 1023/1055 = 97.0% | 863/978 = 88.2% |
S | 1 | 1541 | 1015/1055 = 96.2% | 855/978 = 87.4% |
S | 2 | 1906 | 907/1055 = 85.8% | 617/978 = 63.1% |
S + AC | 1 | 1541 | 1010/1055 = 95.7% | 859/978 = 87.8% |
S + AC | 2 | 1906 | 949/1055 = 90.0% | 684/978 = 70.0% |