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Table 1 AUC values of the best contact cutoff values for the three alignment methods

From: Effective inter-residue contact definitions for accurate protein fold recognition

 

TM-align

HHpred

SUPRB

Cα 6.5/7.0Å

0.907/0.907

0.843/0.835

0.718/0.712

Cβ 6.5/7.0Å

0.907/0.909

0.847/0.847

0.717/0.720

Heavy atom 4.5/5.0 Ã…

0.905/0.903

0.836/0.838

0.713/0.713

  1. The AUC value of the ROC curves of the best contact distance cutoffs for the Cα-Cα, the Cβ-Cβ, and the heavy atom distance.
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BMC Bioinformatics

ISSN: 1471-2105

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