Skip to main content

Table 2 Results from tests of the atomic predictor on finding the binding location of calcium ions

From: Local functional descriptors for surface comparison based binding prediction

PDB Code

1ANX

1AYP

1CGV

1CLM

1OMD

3CLN

1SAC

2SCP

3ICB

3PAL

5CPV

ROC Area

0.92

0.57

1.00

0.94

0.95

0.97

0.96

0.97

0.96

0.98

0.97

  1. Shown are the 11 proteins used as test cases by Altman et. al [45]. To test these, we first trained a predictor on 100 examples of calcium binding, then evaluated each of the above protein surfaces using this predictor to generate an ROC curve for each test. The number below each PDB code is the area under its respective ROC curve. 1.0 indicates a perfect score, with all true positives found and no false positives. See Figure 1 for illustrations to help interpret these numbers.