From: Local functional descriptors for surface comparison based binding prediction
Ligand | Moiety | Training Examples | # |
---|---|---|---|
ATP | Phosphate Chain | ATP, 5FA, CH1, CSG, CTP, D3T, | 36 |
 | (PA O1A O2A O3A PB O1B | DCT, DGT, DTP, GTP, TTP |  |
 | O2B O3B PG O2G O1G O3G) | … |  |
 | Ribose | ATP, 5GP, ACP, ADN, ADP, AMP, | 299 |
 | (C1’ C2’ C3’ C4’ O2’ O3’ O4’) | ANP, AP0, APC, ATG, C5P, FAD, |  |
 |  | GDP, GNP, GTP, NAD, NAP, NDP, |  |
 |  | RIB, SAH, SAM, SSA, UDP, ADP, |  |
 |  | … |  |
 | Adenine | ATP, ACO, ACP, ADP, AMP, ANP, | 265 |
 | (C2 C4 C5 C6 C8 N1 N3 N6 N7 N9) | ATG, CMP, COA, FAD, NAD, NAP, |  |
 |  | NDP, SAH, SAM, … |  |
Glucose | Glucose | GLC | 85 |
HEM | oxygenated end | HEM, DHE, FDE, FDD, HAS, HCO, | 316 |
 | (O1A O2A CGA CBA CAA C2A | HDD, HEA, HEB, HEC, HEV, HFM, |  |
 | CMA C3A C1A CHA C4A NA CHB) | HIF, VEA, VER, … |  |
 | non-oxygenated end (1) | HEM, HDD, HDM, HEA, HEB, | 318 |
 | (CHB C1B NB CMB C2B C4B | HEC, HFM, HKL, … |  |
 | CHC C3B CAB CBB) |  |  |
 | non-oxygenated end (2) | HEM, HDD, HDM, HEA, HEB, | 318 |
 | (CHD C4C NC CAC C3C C1C | HEC, HFM, HKL, … |  |
 | CHC C2C CBC CMC) |  |  |
DHT | (O3 C1-10 C19) | DHT, AE2, AND, C0R, CLR, CPQ, | 40 |
 |  | DXC, FFA, HC2, HCY, STR, TES … |  |
 | (O17 C8 C9 C11-18) | DHT, AE2, AND, ASD, EST, FFA, | 22 |
 |  | TES, WZA … |  |