Table 2 Processing time and limit of SNP markers for SNPEVG1 and SNPEVG2 of 32-bit (Windows 7) and 64-bit versions (Mac OS X) for 100 traits
From: SNPEVG: a graphical tool for GWAS graphing with mouse clicks
Number of SNPs | SNPEVG1 32-bit | SNPEVG1 64-bit | SNPEVG2 32-bit | SNPEVG2 64-bit |
|---|---|---|---|---|
(N) | Time (sec) | Time (sec) | Time (sec) | Time (sec) |
10,000 | 1.56 | 1.57 | 1.75 | 1.41 |
20,000 | 2.57 | 2.21 | 2.36 | 1.78 |
30,000 | 3.75 | 2.73 | 2.96 | 2.17 |
50,000 | 5.74 | 4.17 | 4.61 | 2.75 |
70,000 | 8.38 | 5.78 | 5.80 | 3.49 |
100,000 | 11.79 | 8.29 | 8.09 | 4.75 |
130,000 | Fail | 9.23 | 9.99 | 6.18 |
170,000 | Fail | 13.24 | 13.26 | 7.82 |
210,000 | Fail | 15.90 | Fail | 9.09 |
250,000 | Fail | 18.93 | Fail | 11.14 |
300,000 | Fail | 23.10 | Fail | 13.11 |
350,000 | Fail | 27.35 | Fail | 14.96 |
400,000 | Fail | 31.86 | Fail | 17.07 |