Skip to main content

Table 2 Processing time and limit of SNP markers for SNPEVG1 and SNPEVG2 of 32-bit (Windows 7) and 64-bit versions (Mac OS X) for 100 traits

From: SNPEVG: a graphical tool for GWAS graphing with mouse clicks

Number of SNPs SNPEVG1 32-bit SNPEVG1 64-bit SNPEVG2 32-bit SNPEVG2 64-bit
(N) Time (sec) Time (sec) Time (sec) Time (sec)
10,000 1.56 1.57 1.75 1.41
20,000 2.57 2.21 2.36 1.78
30,000 3.75 2.73 2.96 2.17
50,000 5.74 4.17 4.61 2.75
70,000 8.38 5.78 5.80 3.49
100,000 11.79 8.29 8.09 4.75
130,000 Fail 9.23 9.99 6.18
170,000 Fail 13.24 13.26 7.82
210,000 Fail 15.90 Fail 9.09
250,000 Fail 18.93 Fail 11.14
300,000 Fail 23.10 Fail 13.11
350,000 Fail 27.35 Fail 14.96
400,000 Fail 31.86 Fail 17.07
  1. The 32-bit version was run on a desktop PC with Microsoft Windows 7 and Intel Core i7-2600 CPU of 3.40 GHz and 8 GB memory. The 64-bit version was run on the MacBook Pro with Mac OS X 10.7 and Intel Core i7 CPU of 2.2 GHz and 8 GB memory.