Multiple-platform data integration method with application to combined analysis of microarray and proteomic data

BMC Bioinformatics

Table 5 SCO Summaries for the 9 genes which are identified by multi-platform integration method but not by individual platform analysis

SCO	Sanger	Sanger	Sanger	Sanger	TIGR	Related
	abbreviation	annotation	category	subcategory	category	paper*
SCO1958	uvrA	ABC excision	Macromolecule	DNA-replication,	excinuclease ABC,	[17]
		nuclease subunit A	metabolism	repair, restr./modific’n	A subunit	[17]
SCO2940	other	putative	Not classified	Not classified	xanthine
		oxidoreductase	(included putative	(included putative	dehydrogenase,
			assignments)	assignments)	putative
SCO2951	other	putative malate	Central intermediary	Other central	malate	[16, 17, 19]
		oxidoreductase	metabolisms	intermediary metabolism	oxidoreductase
SCO3094	other	conserved	hypothetical	Conserved in	conserved
		hypothetical	protein	organism other than	hypothetical
		protein	protein	Escherichia coli	protein
SCO4661	fusA	elongation	Macromolecule	Proteins -	translation	[16, 17, 19]
		factor G	metabolism	translation and	elongation
				modification	factor G
SCO5072	actVIORF1	hydroxylacyl-CoA	Secondary	PKS	hydroxylacyl-CoA	[16, 17, 20]
		dehydrogenase	metabolism	PKS	dehydrogenase
SCO5080	actVA5	putative	Secondary	PKS	putative	[17, 18]
		hydrolase	metabolism	PKS	hydrolase
SCO6219	Other	putative ATP/GTP	Protein	Serine/		[17]
		binding protein,	kinases	threonine
		putative serine
SCO6222	other	putative	Not classified	Not classified	aminotransferase,	[15, 17]
		aminotransferase	(included putative	(included putative	class I
			assignments)	assignments)

ISSN: 1471-2105