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Table 1 Viral miRNAs in the study, divided into two groups

From: Finding quasi-modules of human and viral miRNAs: a case study of human cytomegalovirus (HCMV)

 

hcmv-miR-

No. of targets

 

US25-1-3p

49

 

US5-2-3p

70

 

UL36-5p

92

 

US5-1-3p

97

 

UL22A-5p

176

 

UL112-3p

186

A

US25-1-5p

212

 

US33-3p

278

 

US25-2-3p

310

 

UL22A-3p

310

 

US33-5p

320

 

US25-2-5p

352

 

UL36-3p

861

 

US5-2-5p

71

 

US22-3p

102

 

US4-3p

271

 

UL112-5p

295

B

US4-5p-shift5∗

297

 

US29-3p

314

 

US29-5p∗∗

339

 

US22-5p

482

  1. A) miRNAs from miRBase, Release 18 [1]; (B) additional miRNAs recently found by Deep Sequencing [29, 30]. Each group is sorted by the number of targets. ∗The sequence of miR-US4-5p that was detected by deep sequencing in [29, 30] was shifted by 5 bp at the 5′end from the miRBase sequence, we included the shifted sequence in the datasets. ∗∗Denoted as US33a in [29]. In addition, mature miRNAs from miR-UL70 were not detected by the deep-sequencing, thus they were not included in the analysis.
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BMC Bioinformatics

ISSN: 1471-2105

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