Skip to main content

Table 4 Results of the module search algorithm on the parameter sets found in Table 3

From: Finding quasi-modules of human and viral miRNAs: a case study of human cytomegalovirus (HCMV)

Set No.

No. of KEGG

No. of modules

Average No.

 

pathways with

Allb

Significantc

Non-redundantd

of modules

 

modulesa

   

per pathwaye

1

3

5

5

5

1.66

2

72

957

375

278

3.86

3

25

290

162

122

4.88

4

69

934

434

306

4.43

5

45

514

202

143

3.17

  1. The parameter sets 1-5 are listed in Table 3 and described in the Methods section. aThe number of pathways for which significant modules (p-value<0.0001) were found; bThe number of modules found by the enumeration algorithm in the pathways counted in a; cThe number of modules with p-value<0.0001 among the modules in b; dThe number of non-redundant modules among the modules in c. A module is considered to be redundant, if there is another module in the same pathways which is identical to it in gene and miRNA content, except for a variation of up to one gene or one miRNA; eThe average number of non-redundant modules for the pathways in a. Note that set number 1 corresponds to the results of running the algorithm of [15] on the datasets in this paper.