Set No. | No. of KEGG | No. of modules | Average No. |
---|
 | pathways with | Allb | Significantc | Non-redundantd | of modules |
---|
 | modulesa |  |  |  | per pathwaye |
---|
1 | 3 | 5 | 5 | 5 | 1.66 |
2 | 72 | 957 | 375 | 278 | 3.86 |
3 | 25 | 290 | 162 | 122 | 4.88 |
4 | 69 | 934 | 434 | 306 | 4.43 |
5 | 45 | 514 | 202 | 143 | 3.17 |
- The parameter sets 1-5 are listed in Table 3 and described in the Methods section. aThe number of pathways for which significant modules (p-value<0.0001) were found; bThe number of modules found by the enumeration algorithm in the pathways counted in a; cThe number of modules with p-value<0.0001 among the modules in b; dThe number of non-redundant modules among the modules in c. A module is considered to be redundant, if there is another module in the same pathways which is identical to it in gene and miRNA content, except for a variation of up to one gene or one miRNA; eThe average number of non-redundant modules for the pathways in a. Note that set number 1 corresponds to the results of running the algorithm of [15] on the datasets in this paper.