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Table 1 Example of 60-mer probes from Agilent ChIP-on-Chip Set

From: Flexible and efficient genome tiling design with penalized uniqueness score

Probe ID

BLAT hits

MUS coverage

MUS Avg. Len.

U

U p

A_17_P01761220

2

45

17.55

22

6.85

A_17_P17428106

2

44

16.42

24

7.97

A_17_P04386305

2

59

20.86

22

6.59

A_17_P10898621

12

55

20.86

22

6.14

  1. BLAT hits, number of hybridization-quality alignment to the reference genome. MUS coverage is the length of the region on the probe covered by MUS. MUS Avg. Len, is the average length of all MUS within the probe. U, the original uniqueness score. U p , the penalized uniqueness score.
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BMC Bioinformatics

ISSN: 1471-2105

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