From: Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Test data | extract_ORF(Step 3) | extract_PhyloCSF(Step 4) | extract_Pfam(Step 5) | |||
---|---|---|---|---|---|---|
 | Retained | Filtered | Retained | Filtered | Retained | Filtered |
D-1 (1615 lncRNAs) | 952(58.95%) | 663 | 813(50.34%) | 139 | 771(47.74%) | 42 |
D-2 (1615 mRNAs) | 33(2%) | 1582 | 12(0.74%) | 21 | 6(0.37%) | 6 |
D-3 (3230 mRNAs) | 89(2.76%) | 3141 | 45(1.44%) | 44 | 10(0.31%) | 35 |
D-4 (4845 mRNAs) | 112(2.31%) | 3733 | 50(1.03%) | 62 | 18(0.37%) | 32 |