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Table 1 Numbers of retained and filtered transcripts through steps 3-5 of lncRScan

From: Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

Test data

extract_ORF(Step 3)

extract_PhyloCSF(Step 4)

extract_Pfam(Step 5)

 

Retained

Filtered

Retained

Filtered

Retained

Filtered

D-1 (1615 lncRNAs)

952(58.95%)

663

813(50.34%)

139

771(47.74%)

42

D-2 (1615 mRNAs)

33(2%)

1582

12(0.74%)

21

6(0.37%)

6

D-3 (3230 mRNAs)

89(2.76%)

3141

45(1.44%)

44

10(0.31%)

35

D-4 (4845 mRNAs)

112(2.31%)

3733

50(1.03%)

62

18(0.37%)

32