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Figure 12 | BMC Bioinformatics

Figure 12

From: RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures

Figure 12

Statistics of contacts in an NMR file. A) An AAGU tetraloop hairpin from the protein-RNA complex (PDB code 2LBS_A, for the picture of an entire complex, see Figure 7 – here all NMR models are shown). The RNA molecule is colored according to the secondary structure, in violet and pink. B) A statistical contact map of the whole ensemble of RNA chains, 16 models in total. Shades of grey symbolize the percentage of particular contact occurrence in the whole model set. In this case, the C4’ metrics and 12 Å threshold were used to display the variability of contacts in the NMR file analyzed.

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