Protein | Binding site size (atoms) | Method | Percentage of site identified as pocket-lining | ||
---|---|---|---|---|---|
 |  |  | apo structure | Provar Score > 0.75 | Provar Score > 0.25 |
 |  | PASS | 38 | 21 | 64 |
Bcl-X L | 56 | LIGSITE | 73 | 69 | 91 |
 |  | fpocket | 52 | 36 | 89 |
 |  | PASS | 46 | 15 | 50 |
MDM2 | 48 | LIGSITE | 52 | 38 | 77 |
 |  | fpocket | 38 | 6 | 45 |
 |  | PASS | 29 | 26 | 69 |
XiapBir3 | 42 | LIGSITE | 67 | 52 | 98 |
 |  | fpocket | 31 | 24 | 83 |
 |  | PASS | 25 | 16 | 54 |
XiapBir3 | 63 | LIGSITE | 57 | 44 | 87 |
 |  | fpocket | 30 | 19 | 74 |
 |  | PASS | 70 | 35 | 75 |
ZipA | 20 | LIGSITE | 35 | 5 | 60 |
 |  | fpocket | 0 | 15 | 15 |
 |  | PASS | 46 | 23 | 54 |
HPVE2 | 97 | LIGSITE | 44 | 26 | 56 |
 |  | fpocket | 33 | 2 | 53 |
 |  | PASS | 38 | 7 | 58 |
IL2 | 60 | LIGSITE | 22 | 22 | 62 |
 |  | fpocket | 0 | 2 | 2 |
 |  | PASS | 53 | 53 | 68 |
HIV-1 Integrase | 19 | LIGSITE | 37 | 16 | 47 |
 |  | fpocket | 68 | 5 | 58 |
 |  | PASS | 6 | 0 | 29 |
TNFa | 34 | LIGSITE | 3 | 0 | 44 |
 |  | fpocket | 0 | 0 | 3 |
 |  | PASS | 0 | 0 | 69 |
TNFR1a | 16 | LIGSITE | 50 | 38 | 100 |
 |  | fpocket | 0 | 0 | 69 |
 |  | PASS | 62 | 30 | 57 |
MDM4 | 81 | LIGSITE | 44 | 31 | 68 |
 |  | fpocket | 38 | 0 | 42 |
 |  | PASS | 38.5 | 20.5 | 59 |
Mean Values | 49 | LIGSITE | 49 | 31 | 72 |
 |  | fpocket | 37.5 | 8.5 | 48 |