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Table 5 Differences between estimated and expected codon usage biases

From: Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance

Expected CUB

(Estimated CUB)a- (Expected CUB)

 

CDC

Scaled N c

Scaled N c '

0.1

0.00137

0.60854

0.61438

0.2

0.00174

0.47951

0.52490

0.3

-0.00245

0.38428

0.43524

0.4

0.00186

0.27647

0.35793

0.5

-0.00060

0.17750

0.21300

0.6

0.00437

0.08031

0.15215

0.7

0.00542

0.01312

0.06657

0.8

-0.00014

0.04816

-0.02663

0.9b

-

-

-

  1. aEach estimate was averaged over 1000 replicate simulated sequences that each had 100000 codons.
  2. bSequences with the expected codon usage bias at 0.9 were not possible to successfully simulate.
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BMC Bioinformatics

ISSN: 1471-2105

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