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Table 6 Correlation coefficients of codon usage bias with gene expression level

From: Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance

Dataa

E. coli 1

S. cerevisiae 2

D. melanogaster 3

C. elegans 4

A. thaliana 5

 

LB (n = 1762b)

M9 (n = 2766b)

(n = 5142b)

(n = 1651b)

(n = 12184b)

(n = 1332b)

CDCc

0.433

0.367

0.654

0.460

0.374

0.228

Scaled N c 'c

0.315

0.187

0.664

0.302

0.328

0.130

Scaled N c c

0.257

0.125

0.600

0.321

0.192

0.063

CAIc

0.443

0.288

0.675

0.386

-0.118

0.034

  1. aExpression data were obtained from 1Bernstein et al., 2Holstege et al., 3Zhang et al., 4Roy et al., and 5Wuest et al. (see details in Additional file 1).
  2. bNumber of genes (n).
  3. cP < 0.0001 for all values.
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BMC Bioinformatics

ISSN: 1471-2105

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