From: Arena3D: visualizing time-driven phenotypic differences in biological systems
Functionality | Previous versions | Arena3D 2.0 |
---|---|---|
Load network data | x | x |
Load time course data | Â | x |
Layouts | Â | Â |
Circular | x | x |
Grid | x | x |
Spherical | x | x |
Hierarchical | x | x |
Clustering | Â | Â |
Fruchterman - Reingold | x | x |
Distance Geometry | x | x |
Affinity Propagation | x | x |
Markov Clustering | x | x |
K-Means | x | x |
Neighbor Joining | x | x |
UPGMA | x | x |
Move nodes | x | x |
Move/scale/spin layers | x | x |
Time course data analysis | Â | Â |
Time slider | Â | x |
Cluster by gene expression | Â | x |
Highlight peaks | Â | x |
Cluster by top expression changes | Â | x |
Play animation | Â | x |
Individual gene tracking | Â | x |
Pearson/Spearman correlation display | Â | x |
Similarity scoring | Â | x |
Choose color scheme | Â | x |
Colorblind-safe color scheme | Â | x |
Network export | Â | Â |
Medusa format | x | x |
Pajek format | x | x |
VRML format | x | x |
JPEG format | x | x |