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Table 2 abund(k, CLASS)-values for amino acid residues

From: CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure

Residue

CAT_sites

LIG_sites

STRUC_sites

A

-2.0424

-0.3537

-0.1210

C

1.3255

0.7376

1.2398

D

1.1178

0.0426

-0.0498

E

0.6536

-0.3856

-0.6615

F

-0.7708

-0.0081

0.5057

G

-0.7533

0.4195

0.7020

H

1.8883

0.8279

-0.3044

I

-2.8164

-0.3026

-0.6449

K

0.6051

-0.3615

-1.0215

L

-2.4503

-0.5416

0.2116

M

-1.4026

0.1374

-0.4882

N

-0.1972

0.3566

-0.2254

P

-5.0000

-0.4542

0.3643

Q

-0.7243

-0.1841

-0.5615

R

0.6834

0.3879

-0.2593

S

0.0027

-0.0125

-0.7006

T

-0.5435

0.2314

-0.3363

V

-2.9568

-0.4130

-0.3294

W

0.1927

0.5548

1.2811

Y

0.3265

0.4572

0.7058

  1. The score-values were deduced from residues belonging to the respective classes. See formula (6) for a definition of the scores.