From: Comprehensive comparison of graph based multiple protein sequence alignment strategies
 | SP | ||||||
---|---|---|---|---|---|---|---|
Aligner | RV11 (38) | RV12 (44) | RV20 (41) | RV30 (30) | RV40(49) | RV50 (16) | Overall (218) |
MMSA | 0.642 | 0.929 | 0.918 | 0.839 | 0.911 | 0.895 | 0.856 |
ProbCons | 0.670 | 0.941 | 0.917 | 0.845 | 0.903 | 0.894 | 0.862 |
T-Coffee | 0.656 | 0.939 | 0.914 | 0.837 | 0.893 | 0.895 | 0.856 |
MUSCLE | 0.572 | 0.915 | 0.889 | 0.814 | 0.865 | 0.835 | 0.815 |
MAFFT | 0.662 | 0.935 | 0.927 | 0.868 | 0.926 | 0.903 | 0.870 |
ClustalW | 0.501 | 0.865 | 0.852 | 0.725 | 0.789 | 0.742 | 0.746 |
ClustalO | 0.590 | 0.906 | 0.902 | 0.862 | 0.902 | 0.862 | 0.837 |
Kalign | 0.605 | 0.912 | 0.900 | 0.813 | 0.884 | 0.820 | 0.822 |
MSAProbs | 0.682 | 0.946 | 0.928 | 0.865 | 0.925 | 0.908 | 0.876 |
 | Time(sec) | ||||||
Aligner | RV11 (38) | RV12 (44) | RV20 (41) | RV30 (30) | RV40(49) | RV50 (16) | Overall (218) |
MMSA | 0.817 | 1.772 | 69.797 | 119.424 | 38.725 | 38.453 | 44.831 |
ProbCons | 2.481 | 7.052 | 142.641 | 297.473 | 108.307 | 124.235 | 113.698 |
T-Coffee | 15.058 | 23.310 | 259.227 | 646.212 | 202.948 | 210.856 | 226.269 |
MUSCLE | 0.701 | 0.824 | 5.490 | 7.538 | 9.519 | 7.002 | 5.179 |
MAFFT | 0.840 | 1.580 | 14.071 | 25.811 | 27.455 | 18.434 | 14.698 |
ClustalW | 0.310 | 0.923 | 13.281 | 25.231 | 8.155 | 8.982 | 9.480 |
ClustalO | 0.406 | 0.747 | 4.224 | 4.824 | 5.214 | 4.790 | 3.368 |
Kalign | 0.054 | 0.090 | 0.435 | 0.562 | 0.559 | 0.411 | 0.352 |
MSAProbs | 2.092 | 6.436 | 141.371 | 295.506 | 86.463 | 102.198 | 105.678 |