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Table 3 New CODD domains in P. falciparum at 10% FDR

From: Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum

 

Dom.

Fam.

Abs. P.f.

Abs. Alv.

Pfam

404 (330)

228 (169)

85 (66)

26 (24)

Score Adjustment

427 (332)

226 (151)

82 (63)

24 (22)

Enriched Alignment

529 (312)

274 (131)

93 (55)

21 (18)

Substitution Matrix

474 (379)

266 (197)

99 (85)

32 (31)

Match-state Clustering

516 (358)

288 (180)

111 (81)

39 (34)

  1. Number of new domains (Dom.), domain families of the new domains (Fam.), domain families previously thought to be absent in P. falciparum (Abs. P.f.), and domain families previously thought to be absent in all Alveolata (Abs. Alv.), identified by CODD with the different libraries at 10% FDR. Numbers in parenthesis refer to domains/families that are new compared to Table 1 for the same library.
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BMC Bioinformatics

ISSN: 1471-2105

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