From: An integrative variant analysis suite for whole exome next-generation sequencing data
SNPs | |||
---|---|---|---|
Description | Type | z-value | p-value |
Reference/variant reads ratio | Numeric | -34.36 | < 2E-16 |
Strand direction | Boolean | 17.57 | < 2E-16 |
Mean distance to 3' end | Numeric | 16.87 | < 2E-16 |
Mean neighboring base quality (NBQ) | Numeric | 14.83 | < 2E-16 |
Mean variant base quality | Numeric | 10.61 | < 2E-16 |
Mean NBQ × Mean distance 3' (interaction) | Numeric | -12.39 | < 2E-16 |
Strand direction × Mean distance 3' (interaction) | Numeric | -10.52 | < 2E-16 |
INDELs | |||
Description | Type | z-value | p-value |
Mean neighbor base quality (NBQ) | Numeric | 9.097 | < 2E-16 |
Normalized variant square (NVS) | Numeric | 7.035 | 2.00E-12 |
Mean variation rate | Numeric | -6.669 | 2.57E-11 |
Read end ratio | Numeric | -4.436 | 9.15E-06 |