Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

BMC Bioinformatics

Table 8 Matching results for the A_23_P140170 gene expression feature of the TCGA II data set

Gene expression feature to be matched
Chr.	Start	End
14	38570874	38642188
Matching DNA copy number features
Chr.	Start	End	dist.	dist.Any	dist.Any	overl.	over.Any	over.Any	over.Plus
				(< 10 k)	(< 100 k)		(> 0%)	(> 10%)
14	38510003	38510062			x
14	38542068	38542127			x
14	38555801	38555860			x
14	38562310	38562358			x
14	38571564	38571623			x	x	x	x	x
14	38581765	38581824			x		x	x
14	38587626	38587685			x		x	x
14	38597108	38597167		x	x		x	x
14	38602277	38602335		x	x		x	x
14	38609230	38609289	x	x	x		x	x
14	38614898	38614957		x	x		x	x
14	38626492	38626551			x		x	x
14	38631536	38631595			x		x	x
14	38639169	38639225			x		x	x
14	38646487	38646546			x
14	38653819	38653878			x
14	38665516	38665575			x
14	38670657	38670716			x
14	38675867	38675926			x
14	38682480	38682539			x
14	38686855	38686914			x
14	38693139	38693198			x
14	38697285	38697344			x
14	38701438	38701497			x
14	38705250	38705309			x

An ‘x’ denotes that that DNA copy number feature has been selected by the corresponding matching procedure. The dashed lines indicate the boundaries of the gene.

ISSN: 1471-2105