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Table 9 Pairwise comparison of cis -correlations

From: Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

 

dist.

dist.Any

dist.Any

overl.

over.Any

over.Any

over.Plus

  

(< 10 k)

(< 100 k)

 

(> 0%)

(> 10%)

 

distance

       

Chin

-

15

7

8

15

14

8

TCGA II

-

5869

778

1253

1632

1641

1253

distanceAny (< 10 k)

       

Chin

1

-

10

17

15

15

17

TCGA II

919

-

5957

6153

5694

5698

6153

distanceAny (< 100 k)

       

Chin

11

9

-

9

11

10

9

TCGA II

6102

5821

-

1808

1812

1823

1808

overlap

       

Chin

1

9

4

-

8

7

0

TCGA II

1294

6090

1770

-

1883

1885

0

overlapAny (> 0%)

       

Chin

10

12

14

13

-

5

13

TCGA II

2071

5807

2131

2116

-

168

2116

overlapAny (> 10%)

       

Chin

10

12

14

11

3

-

11

TCGA II

2074

5810

2137

2122

161

-

2122

overlapPlus

       

Chin

1

9

4

0

8

7

-

TCGA II

1294

6090

1770

0

1883

1885

-

  1. The upper triangle contains the number of genes (within the set of intersecting genes) with cis-correlations (Spearman) of the column matching procedure exceeding those of the row matching procedure. Low triangle similar, but defined vice versa. Recall the number of intersecting genes equals 157 (Chin) and 31947 (TCGA II).