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Table 1 Comparison of Readjoiner and Edena

From: Readjoiner: a fast and memory efficient string graph-based sequence assembler

  RJ Edena Edena RJ RJ Edena Edena RJ RJ Edena Edena RJ
Read set c22 c22 - c15 c15 - c7 c7 -
Genome size (Mbp) 34.9 34.9 - 81.7 81.7 - 155.4 155.4 -
Number of reads (M) 7.0 7.0 - 16.3 16.3 - 31.1 31.1 -
Contained reads (K) 686.4 686.4 - 1665.7 1665.7 - 3103.0 3103.0 -
Irreducible SPM (M) 7.2 7.2 - 17.2 17.2 - 36.4 36.4 -
Overall time (s) 360 4903 13.62× 945 13609 14.40× 2035 29404 14.45×
Overall space (MB) 294 2753 9.35× 703 6415 9.13× 1331 12255 9.21×
Contigs 120712 120462 - 254830 254111 - 503446 502706 -
Total contigs length (Mbp) 45.7 44.7 - 103.0 101.1 - 198.8 195.0 -
Assembly N50 (Kbp) 1.6 1.7 - 2.4 2.5 - 2.3 2.4 -
Assembly NG50 (Kbp) 2.7 2.7 - 3.7 3.7 - 3.9 3.9 -
Longest contig (Kbp) 41.4 41.4 - 54.2 54.2 - 44.9 44.9 -
  1. Results of applying Readjoiner (RJ) and Edena to the datasets c22, c15, c7 (ℓ min  = 45).