From: Readjoiner: a fast and memory efficient string graph-based sequence assembler
 | RJ | LEAP |
| RJ | LEAP |
| RJ | LEAP |
| RJ | RJ |
---|---|---|---|---|---|---|---|---|---|---|---|
Read set | c22 | c22 | - | c2 | c2 | - | hg20× | hg20× | - | hg30× | hg40× |
Genome size (Mbp) | 34.9 | 34.9 | - | 238.2 | 238.2 | - | 2861.3 | 2861.3 | - | 2861.3 | 2861.3 |
Number of reads (M) | 7.0 | 7.0 | - | 47.6 | 47.6 | - | 579.5 | 579.5 | - | 869.2 | 1155.3 |
Overall time | 6 min | 9 min | 1.60× | 53 min | 1 h 36 min | 1.81× | 20 h 4 min | 35 h 56 min | 1.79× | 34 h 9 min | 51 h 16 min |
Overall space (GB) | 0.3 | 0.9 | 2.99× | 2.0 | 4.0 | 1.98× | 27.9 | 45.6 | 1.63× | 39.8 | 52.0 |
Contigs | 120712 | 113428 | - | 634403 | 630408 | - | 3239309 | 11662607 | - | 13497497 | 16253905 |
Total contigs length (Mbp) | 45.7 | 43.1 | - | 292.2 | 280.6 | - | 2833.1 | 3642.7 | - | 4003.9 | 4281.1 |
Assembly N50 (Kbp) | 1.6 | 1.6 | - | 3.2 | 3.0 | - | 3.0 | 1.4 | - | 1.2 | 0.9 |
Assembly NG50 (Kbp) | 2.7 | 2.4 | - | 4.5 | 3.9 | - | 3.0 | 2.5 | - | 2.9 | 2.8 |
Longest contig (Kbp) | 41.4 | 39.4 | - | 52.9 | 48.9 | - | 63.4 | 58.6 | - | 63.4 | 63.4 |