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Table 5 Assembly of error-containing reads

From: Readjoiner: a fast and memory efficient string graph-based sequence assembler

 

N50 (bp)

NG50 (bp)

 

RJ

SGA

RJ

SGA

Ecoli-without-errors

54948

54936

57213

57210

Ecoli-with-errors

203

5110

245

8645

Ecoli-SGA-corrected

38178

40002

39999

40824

Ecoli-SGA-corrected+filtered

41872

41872

41905

41903

  1. N50 and NG50 values for the Readjoiner and SGA assemblies of Ecoli-without-errors, Ecoli-with-errors, Ecoli-SGA-corrected and Ecoli-SGA-corrected+filtered.