Detecting long tandem duplications in genomic sequences

BMC Bioinformatics

Table 2 Comparison with annotated elements

Arabidopsis vs Arabidopsis	Total	Detected	Detected (%)
Gene	27169	3462	12.7
Trans. Element gene	3899	118	3.0
Pseudogene	871	220	25.2
Unknown gene	23	3	13.0
pre-tRNA	631	120	19.0
miRNA	174	19	10.9
snoRNA	71	8	11.3
Other RNA	301	29	9.6

The different types of annotated elements detected by TUs. The first column gives the number of annotated elements of each type in TAIR10. The second column gives the number of such element that are covered by TUs. The detected percentage of regions is indicated in the last column. The predicted TUs are enriched in pseudo-genes and pre-tRNA which often appear in clusters.

ISSN: 1471-2105