Table 3 Results for the FACS simHC metagenomic data set (105sequences, 269 bp)
From: A comparative evaluation of sequence classification programs
| Â | actual | CARMA | MEGAN | MetaPhyler | MG-RAST |
|---|---|---|---|---|---|
percentage of sequence classified | Â | 29.0 | 54.4 | 0.2 | 27.1 |
Eukaryota | 73.0 | 30.3 | 42.0 | 0.0 | 21.0 |
Bacteria | 25.6 | 62.8 | 52.0 | 84.0 | 71.5 |
Viruses | 1.5 | 0.0 | 0.3 | 0.0 | 0.1 |
Archaea | 0.0 | 6.9 | 5.7 | 16.0 | 7.3 |
percentage of sequence misclassified | Â | 8.0 | 12.2 | 16.0 | 7.6 |
correlation coefficient | Â | 0.45 | 0.72 | -0.09 | 0.26 |