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Figure 3 | BMC Bioinformatics

Figure 3

From: MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity

Figure 3

Schema of network integration and visualization using MetaMapp and Cytoscape. For biochemical mapping, the KEGG reactant pairs database was used. Chemical similarity mapping was performed using 881- substructure fingerprints within the PubChem database. MetaMapp tools then integrated biochemical and chemical similarity matrix files to visualize the network in Cytoscape. Attribute files such as fold-changes and statistical thresholds were added to inform about metabolic regulation in case/control studies.

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BMC Bioinformatics

ISSN: 1471-2105

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