TY - JOUR AU - Goffeau, A. AU - Barrell, B. G. AU - Bussey, H. AU - Davis, R. W. AU - Dujon, B. AU - Feldmann, H. AU - Galibert, F. AU - Hoheisel, J. D. AU - Jacq, C. AU - Johnston, M. AU - Louis, E. J. AU - Mewes, H. W. AU - Murakami, Y. AU - Philippsen, P. AU - Tettelin, H. AU - Oliver, S. G. PY - 1996 DA - 1996// TI - Life with 6000 genes JO - Science VL - 274 ID - Goffeau1996 ER - TY - CHAP AU - Lambrix, P. AU - Jakoniene, V. ED - Chen, Y. -. P. P. PY - 2003 DA - 2003// TI - Towards transparent access to multiple biological databanks BT - Proceedings of the First Asia-Pacific bioinformatics conference on Bioinformatics; 4-7 February 2003; Adelaide, Australia PB - Australian Computer Society CY - Inc ID - Lambrix2003 ER - TY - JOUR AU - Hernandez, T. AU - Kambhampati, S. PY - 2004 DA - 2004// TI - Integration of biological sources: current systems and challenges ahead JO - SIGMOD Rec VL - 33 UR - https://doi.org/10.1145/1031570.1031583 DO - 10.1145/1031570.1031583 ID - Hernandez2004 ER - TY - JOUR AU - Davidson, S. B. AU - Crabtree, J. AU - Brunk, B. P. AU - Schug, J. AU - Tannen, V. AU - Overton, G. C. AU - Stoeckert, J. C. J. PY - 2001 DA - 2001// TI - K2/Kleisli and GUS: experiments in integrated access to Genomic Data Sources JO - IBM System Journal VL - 40 UR - https://doi.org/10.1147/sj.402.0512 DO - 10.1147/sj.402.0512 ID - Davidson2001 ER - TY - JOUR AU - Shah, S. P. AU - Huang, Y. AU - Xu, T. AU - Yuen, M. M. AU - Ling, J. AU - Ouellette, B. F. PY - 2005 DA - 2005// TI - Atlas - a data warehouse for integrative bioinformatics JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-34 DO - 10.1186/1471-2105-6-34 ID - Shah2005 ER - TY - STD TI - BioSQL[http://www.biosql.org/wiki/Main_Page] UR - http://www.biosql.org/wiki/Main_Page ID - ref6 ER - TY - STD TI - BioMART Project[http://www.biomart.org/index.html] UR - http://www.biomart.org/index.html ID - ref7 ER - TY - JOUR AU - Lee, T. J. AU - Pouliot, Y. AU - Wagner, V. AU - Gupta, P. AU - Stringer-Calvert, D. W. AU - Tenenbaum, J. D. AU - Karp, P. D. PY - 2006 DA - 2006// TI - BioWarehouse: a bioinformatics database warehouse toolkit JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-170 DO - 10.1186/1471-2105-7-170 ID - Lee2006 ER - TY - JOUR AU - Mungall, C. J. AU - Emmert, D. B. PY - 2007 DA - 2007// TI - A Chado case study: an ontology-based modular schema for representing genome-associated biological information JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm189 DO - 10.1093/bioinformatics/btm189 ID - Mungall2007 ER - TY - CHAP AU - Jörg, T. AU - Deßloch, S. ED - Desai, B. C. PY - 2008 DA - 2008// TI - Towards generating ETL processes for incremental loading BT - Proceedings of the 12th International Database Engineering and Applications Symposium (IDEAS 2008); 10-12 September 2008; Coimbra, Portugal UR - https://doi.org/10.1145/1451940.1451956 DO - 10.1145/1451940.1451956 ID - Jörg2008 ER - TY - JOUR AU - Florescu, D. AU - Levy, A. AU - Mendelzon, A. PY - 1998 DA - 1998// TI - Database techniques for the World-Wide Web: a survey JO - SIGMOD Rec VL - 27 UR - https://doi.org/10.1145/290593.290605 DO - 10.1145/290593.290605 ID - Florescu1998 ER - TY - JOUR AU - Davidson, S. B. AU - Overton, C. AU - Buneman, P. PY - 1995 DA - 1995// TI - Challenges in integrating biological data sources JO - J Comput Biol VL - 2 UR - https://doi.org/10.1089/cmb.1995.2.557 DO - 10.1089/cmb.1995.2.557 ID - Davidson1995 ER - TY - CHAP AU - Lenzerini, M. ED - Popa, L. PY - 2002 DA - 2002// TI - Data integration: a theoretical perspective BT - Proceedings of the twenty-first ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems; 3-5 June 2002 Madison, Wisconsin ID - Lenzerini2002 ER - TY - STD TI - YeastMed Project[http://www.khaos.uma.es/yeastmed/] UR - http://www.khaos.uma.es/yeastmed/ ID - ref14 ER - TY - JOUR AU - Navas-Delgado, I. AU - Aldana-Montes, J. F. PY - 2009 DA - 2009// TI - Extending SD-Core for Ontology-based Data Integration JO - Journal of Universal Computer Science VL - 15 ID - Navas-Delgado2009 ER - TY - JOUR AU - Engel, S. R. AU - Balakrishnan, R. AU - Binkley, G. AU - Christie, K. R. AU - Costanzo, M. C. AU - Dwight, S. S. AU - Fisk, D. G. AU - Hirschman, J. E. AU - Hitz, B. C. AU - Hong, E. L. AU - Krieger, C. J. AU - Livstone, M. S. AU - Miyasato, S. R. AU - Nash, R. AU - Oughtred, R. AU - Park, J. AU - Skrzypek, M. S. AU - Weng, S. AU - Wong, E. D. AU - Dolinski, K. AU - Botstein, D. AU - Cherry, J. M. PY - 2010 DA - 2010// TI - Saccharomyces Genome Database provides mutant phenotype data JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp917 DO - 10.1093/nar/gkp917 ID - Engel2010 ER - TY - JOUR AU - Teixeira, M. C. AU - Monteiro, P. AU - Jain, P. AU - Tenreiro, S. AU - Fernandes, A. R. AU - Mira, N. P. AU - Alenquer, M. AU - Freitas, A. T. AU - Oliveira, A. L. AU - Sa-Correia, I. PY - 2006 DA - 2006// TI - The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj013 DO - 10.1093/nar/gkj013 ID - Teixeira2006 ER - TY - JOUR AU - Guldener, U. AU - Munsterkotter, M. AU - Kastenmuller, G. AU - Strack, N. AU - van Helden, J. AU - Lemer, C. AU - Richelles, J. AU - Wodak, S. J. AU - Garcia-Martinez, J. AU - Perez-Ortin, J. E. AU - Michael, H. AU - Kaps, A. AU - Talla, E. AU - Dujon, B. AU - Andre, B. AU - Souciet, J. L. AU - De Montigny, J. AU - Bon, E. AU - Gaillardin, C. AU - Mewes, H. W. PY - 2005 DA - 2005// TI - CYGD: the Comprehensive Yeast Genome Database JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki053 DO - 10.1093/nar/gki053 ID - Guldener2005 ER - TY - JOUR AU - Stark, C. AU - Breitkreutz, B. J. AU - Chatr-Aryamontri, A. AU - Boucher, L. AU - Oughtred, R. AU - Livstone, M. S. AU - Nixon, J. AU - Van Auken, K. AU - Wang, X. AU - Shi, X. AU - Reguly, T. AU - Rust, J. M. AU - Winter, A. AU - Dolinski, K. AU - Tyers, M. PY - 2011 DA - 2011// TI - The BioGRID Interaction Database: 2011 update JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1116 DO - 10.1093/nar/gkq1116 ID - Stark2011 ER - TY - JOUR AU - Stark, C. AU - Su, T. C. AU - Breitkreutz, A. AU - Lourenco, P. AU - Dahabieh, M. AU - Breitkreutz, B. J. AU - Tyers, M. AU - Sadowski, I. PY - 2010 DA - 2010// TI - PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae JO - Database (Oxford) VL - 2010 UR - https://doi.org/10.1093/database/bap026 DO - 10.1093/database/bap026 ID - Stark2010 ER - TY - JOUR AU - Alfieri, R. AU - Merelli, I. AU - Mosca, E. AU - Milanesi, L. PY - 2008 DA - 2008// TI - The cell cycle DB: a systems biology approach to cell cycle analysis JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm873 DO - 10.1093/nar/gkm873 ID - Alfieri2008 ER - TY - JOUR AU - Cheung, K. H. AU - Yip, K. Y. AU - Smith, A. AU - Deknikker, R. AU - Masiar, A. AU - Gerstein, M. PY - 2005 DA - 2005// TI - YeastHub: a semantic web use case for integrating data in the life sciences domain JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti1026 DO - 10.1093/bioinformatics/bti1026 ID - Cheung2005 ER - TY - CHAP AU - Broekstra, J. AU - Kampman, A. AU - van Harmelen, F. ED - Horrocks, I. ED - Hendler, J. PY - 2002 DA - 2002// TI - Sesame: a generic architecture for storing and querying RDF and RDF Schema BT - The Semantic Web - ISWC 2002 UR - https://doi.org/10.1007/3-540-48005-6_7 DO - 10.1007/3-540-48005-6_7 ID - Broekstra2002 ER - TY - CHAP AU - Buneman, P. AU - Davidson, S. B. AU - Hart, K. AU - Overton, G. C. AU - Wong, L. ED - Dayal, U. ED - Gray, P. M. D. ED - Nishio, S. PY - 1995 DA - 1995// TI - A data transformation system for biological data sources BT - Proceedings of the 21th International Conference on Very Large Data Bases; 11-15 September 1995; Zurich, Switzerland ID - Buneman1995 ER - TY - JOUR AU - Haas, L. M. AU - Schwarz, P. M. AU - Kodali, P. AU - Kotlar, E. AU - Rice, J. E. AU - Swope, W. C. PY - 2001 DA - 2001// TI - DiscoveryLink: a system for integrated access to life sciences data sources JO - IBM Systems Journal VL - 40 UR - https://doi.org/10.1147/sj.402.0489 DO - 10.1147/sj.402.0489 ID - Haas2001 ER - TY - JOUR AU - Haas, L. M. AU - Miller, R. J. AU - Niswonger, B. AU - Roth, M. T. AU - Schwarz, P. M. AU - Wimmers, E. L. PY - 1999 DA - 1999// TI - Transforming heterogeneous data with Database Middleware: beyond integration JO - IEEE Data Eng Bull VL - 22 ID - Haas1999 ER - TY - JOUR AU - Stevens, R. AU - Baker, P. AU - Bechhofer, S. AU - Ng, G. AU - Jacoby, A. AU - Paton, N. W. AU - Goble, C. A. AU - Brass, A. PY - 2000 DA - 2000// TI - TAMBIS: transparent access to multiple bioinformatics information sources JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.2.184 DO - 10.1093/bioinformatics/16.2.184 ID - Stevens2000 ER - TY - JOUR AU - Rector, A. L. AU - Bechhofer, S. AU - Goble, C. A. AU - Horrocks, I. AU - Nowlan, W. A. AU - Solomon, W. D. PY - 1997 DA - 1997// TI - The GRAIL concept modelling language for medical terminology JO - Artif Intell Med VL - 9 UR - https://doi.org/10.1016/S0933-3657(96)00369-7 DO - 10.1016/S0933-3657(96)00369-7 ID - Rector1997 ER - TY - CHAP AU - Cadag, E. AU - Louie, B. AU - Myler, P. J. AU - Tarczy-Hornoch, P. PY - 2007 DA - 2007// TI - Biomediator data integration and inference for functional annotation of anonymous sequences BT - Pac Symp Biocomput ID - Cadag2007 ER - TY - CHAP AU - Halevy, A. AU - Rajaraman, A. AU - Ordille, J. ED - Dayal, U. ED - Whang, K. -. Y. ED - Lomet, D. B. ED - Alonso, G. ED - Lohman, G. M. ED - Kersten, M. L. ED - Cha, S. K. ED - Kim, Y. -. K. PY - 2006 DA - 2006// TI - Data integration: the teenage years BT - Proceedings of the 32nd international conference on Very large data bases; 12-15 September 2006; Seoul, Korea ID - Halevy2006 ER - TY - CHAP AU - Zamboulis, L. AU - Martin, N. AU - Poulovassilis, A. ED - Cohen-Boulakia, S. ED - Tannen, V. PY - 2007 DA - 2007// TI - Bioinformatics service reconciliation by heterogeneous schema transformation BT - Proceedings of the 4th international conference on Data integration in the life sciences; 27-29 June 2007; Philadelphia, PA, USA ID - Zamboulis2007 ER - TY - CHAP AU - Rifaieh, R. AU - Unwin, R. AU - Carver, J. AU - Miller, M. A. ED - Cohen-Boulakia, S. ED - Tannen, V. PY - 2007 DA - 2007// TI - SWAMI: integrating biological databases and analysis tools within user friendly environment BT - Proceedings of the 4th international conference on Data integration in the life sciences; 27-29 June 2007; Philadelphia, PA, USA ID - Rifaieh2007 ER - TY - CHAP AU - Levy, A. ED - Wooldridge, M. ED - Veloso, M. PY - 1999 DA - 1999// TI - Combining artificial intelligence and databases for data integration BT - Artificial Intelligence Today UR - https://doi.org/10.1007/3-540-48317-9_10 DO - 10.1007/3-540-48317-9_10 ID - Levy1999 ER - TY - STD TI - YeastMed Ontology[http://www.khaos.uma.es/yeastmed/download.html] UR - http://www.khaos.uma.es/yeastmed/download.html ID - ref34 ER - TY - JOUR AU - Eriksson, P. R. AU - Ganguli, D. AU - Clark, D. J. PY - 2011 DA - 2011// TI - Spt10 and Swi4 control the timing of histone H2A/H2B gene activation in budding yeast JO - Mol Cell Biol VL - 31 UR - https://doi.org/10.1128/MCB.00909-10 DO - 10.1128/MCB.00909-10 ID - Eriksson2011 ER - TY - JOUR AU - French, S. L. AU - Sikes, M. L. AU - Hontz, R. D. AU - Osheim, Y. N. AU - Lambert, T. E. AU - El Hage, A. AU - Smith, M. M. AU - Tollervey, D. AU - Smith, J. S. AU - Beyer, A. L. PY - 2011 DA - 2011// TI - Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes JO - Mol Cell Biol VL - 31 UR - https://doi.org/10.1128/MCB.00589-10 DO - 10.1128/MCB.00589-10 ID - French2011 ER - TY - STD TI - OWL 2 Web Ontology Language Primer[http://www.w3.org/TR/owl2-primer/] UR - http://www.w3.org/TR/owl2-primer/ ID - ref37 ER - TY - STD TI - Resource Description Framework (RDF): concepts and abstract syntax[http://www.w3.org/TR/rdf-concepts/] UR - http://www.w3.org/TR/rdf-concepts/ ID - ref38 ER - TY - STD TI - RDF Vocabulary Description Language 1.0: RDF Schema[http://www.w3.org/TR/rdf-schema/] UR - http://www.w3.org/TR/rdf-schema/ ID - ref39 ER - TY - CHAP AU - Navas-Delgado, I. AU - Aldana-Montes, J. ED - Lovrek, I. ED - Howlett, R. ED - Jain, L. PY - 2008 DA - 2008// TI - SD-Core: generic semantic middleware components for the Semantic Web BT - Knowledge-Based Intelligent Information and Engineering Systems UR - https://doi.org/10.1007/978-3-540-85565-1_76 DO - 10.1007/978-3-540-85565-1_76 ID - Navas-Delgado2008 ER - TY - CHAP AU - Marrakchi, K. AU - Briache, A. AU - Kerzazi, A. AU - Navas-Delgado, I. AU - Aldana-Montes, J. AU - Ettayebi, M. AU - Lairini, K. AU - Rossi Hassani, B. ED - Lambrix, P. ED - Kemp, G. PY - 2010 DA - 2010// TI - A Data Warehouse approach to semantic integration of Pseudomonas Data BT - Data Integration in the Life Sciences UR - https://doi.org/10.1007/978-3-642-15120-0_8 DO - 10.1007/978-3-642-15120-0_8 ID - Marrakchi2010 ER - TY - JOUR AU - Reyes-Palomares, A. AU - Montanez, R. AU - Real-Chicharro, A. AU - Chniber, O. AU - Kerzazi, A. AU - Navas-Delgado, I. AU - Medina, M. A. AU - Aldana-Montes, J. F. AU - Sanchez-Jimenez, F. PY - 2009 DA - 2009// TI - Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp061 DO - 10.1093/bioinformatics/btp061 ID - Reyes-Palomares2009 ER - TY - JOUR AU - Navas-Delgado, I. AU - Montanez, R. AU - Pino-Angeles, A. AU - Moya-Garcia, A. A. AU - Urdiales, J. L. AU - Sanchez-Jimenez, F. AU - Aldana-Montes, J. F. PY - 2008 DA - 2008// TI - AMMO-Prot: amine system project 3D-model finder JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-S4-S5 DO - 10.1186/1471-2105-9-S4-S5 ID - Navas-Delgado2008 ER - TY - CHAP AU - Vardi, M. Y. PY - 1982 DA - 1982// TI - The complexity of relational query languages (Extended Abstract) BT - Proceedings of the fourteenth annual ACM symposium on Theory of computing; 5-7 May 1982; San Francisco, California, United States ID - Vardi1982 ER - TY - CHAP AU - Chin, J. P. AU - Diehl, V. A. AU - Norman, K. L. ED - Soloway, E. ED - Frye, D. ED - Sheppard, S. B. PY - 1988 DA - 1988// TI - Development of an instrument measuring user satisfaction of the human-computer interface BT - Proceedings of the SIGCHI conference on Human factors in computing systems; 15-19 June 1988; Washington, D.C., United States ID - Chin1988 ER - TY - CHAP AU - Brooke, J. ED - Jordan, B. T. P. W. ED - Weerdmeester, B. A. ED - McClelland, A. L. PY - 1996 DA - 1996// TI - SUS: a quick and dirty usability scale BT - Usability Evaluation in Industry PB - Francis CY - London ID - Brooke1996 ER - TY - JOUR AU - Lewis, J. R. PY - 1995 DA - 1995// TI - IBM computer usability satisfaction questionnaires: psychometric evaluation and instructions for use JO - Int J Hum-Comput Interact VL - 7 UR - https://doi.org/10.1080/10447319509526110 DO - 10.1080/10447319509526110 ID - Lewis1995 ER - TY - CHAP AU - Benedek, J. AU - Miner, T. PY - 2002 DA - 2002// TI - Measuring desirability: new methods for evaluating desirability in a usability lab setting BT - Proceedings of the Usability Professionals Association (UPA 2002); 8-12 July 2002; Orlando, FL ID - Benedek2002 ER - TY - CHAP AU - Tullis, T. AU - Stetson, J. N. PY - 2004 DA - 2004// TI - A comparison of questionnaires for assessing website usability BT - Proceedings of the Usability Professionals Association (UPA); 7-11 June 2004 Minneapolis, Minnesota ID - Tullis2004 ER - TY - CHAP AU - Cohen-Boulakia, S. AU - Davidson, S. AU - Froidevaux, C. ED - Ludäscher, B. ED - Raschid, L. PY - 2005 DA - 2005// TI - A user-centric framework for accessing biological sources and tools BT - Data Integration in the Life Sciences UR - https://doi.org/10.1007/11530084_3 DO - 10.1007/11530084_3 ID - Cohen-Boulakia2005 ER -